- 2How do I open/read my metadata?
- 3What if I cannot read my metadata via a GUI?!
When acquiring images in microscopy, the image files that are stored contain two main things:
The Meta tag analyzer tool is there to give website owners an inside and out analysis of their Meta labels and pages. This kind of Meta Tag checker breaks down the Meta labels as well as the catchphrases on the page, from the pictures, from the heading labels, and from the required URLs. . meta-fsl-bsp-release. meta-bsp - updates for meta-freescale, poky, and meta-openembedded layers. meta-sdk - updates for meta-freescale-distros Yocto Project community layers. meta-freescale: provides support for the base and for i.MX Arm® reference boards. meta-freescale-3rdparty: provides support for 3rd party and partner boards.
- image data: which is essentially 'pixel values'
- metadata: information on the image data including pixel size, bit depth, dimension and objective information, etc.
Metadata is essential to correctly read image data; for example, to have accurate measurements, the image needs to be calibrated according to the correct/associated pixel size. Saving and preserving metadata is key in quantitative image analysis.
To start, try a high level API approach via a GUI..
Using a GUI
Meta Image 1 6 14 Inches
If importing your images via Bio-Formats Importer (which we suggest you do), you can either:
- In Stack Viewing, View stack with: 'Metadata only'
OR
- In Metadata viewing: check 'Display Metadata' or 'Display OME-XML metadata'
OMEVisual is another tool that can visualize OME metadata; it is a Fiji plugin.
These tools allow you to quickly check if your metadata 'looks' correct.. are there the correct number of image blocks (i.e. one per tile if multi-scan image)? Are the dimensions correct? etc.
Did you observe a problem with your metadata via a GUI? Was there no data at all? Or was metadata missing? If this is the case, then perhaps there are structural issues with your metadata that require a bit more in-depth inspection via command line tools.
Using the Command Line
Iboostup premium 6 8. Bio-Formats has a whole host of information regarding extracting, processing, and validating OME-XML. Leaf rss news reader 5 1 1. So check out their resources for more detailed information.
In brief, there are command line tools available via Bio-Formats to properly inspect and validate the XML in an OME-TIFF file. 1password password manager and secure wallet 6 5 3.
Meta Image 1 6 14 Ft
Iboostup premium 6 8. Bio-Formats has a whole host of information regarding extracting, processing, and validating OME-XML. Leaf rss news reader 5 1 1. So check out their resources for more detailed information.
In brief, there are command line tools available via Bio-Formats to properly inspect and validate the XML in an OME-TIFF file. 1password password manager and secure wallet 6 5 3.
Meta Image 1 6 14 Ft
Meta Image 1 6 14 Tractor Tire
Both the tiffcomment and xmlvalid commands are used; tiffcomment extracts the XML from the file and xmlvalid validates the XML and prints any errors to the console. See this page for more details.
MetaImage supports more than 90 formats: PNG, JPEG and TIFF files as well as a large number of RAW files. You can contact us for more information or if the formats you need are not supported yet.
Notation: R: Read / W: Write / C : Create.
Meta Image 1 6 14 Inch
| File Type | EXIF | IPTC | XMP | ICC | Other |
|---|---|---|---|---|---|
| 3FR | R | R | R | R | - |
| AI, AIT | R/W/C4 | R/W/C4 | R/W/C5 | R/W/C4 | R/W/C PDF PostScript, R Photoshop |
| ARW | R/W/C | R/W/C | R/W/C | R/W/C | R/W Sony SonyIDC |
| BPG | R | - | R | R | R BPG |
| CR2 | R/W/C | R/W/C | R/W/C | R/W/C | R/W Canon, R/W/C CanonVRD |
| CR3 | R/W/C | - | R/W/C | - | R/W Canon QuickTime, R/W/C CanonVRD |
| CRM | R/W/C | - | R/W/C | - | R/W Canon QuickTime |
| CRW, CIFF | - | - | R/W/C | - | R/W CanonRaw, R/W/C CanonVRD |
| CS1 | R/W/C | R/W/C | R/W/C | R/W/C | R Photoshop |
| DCM, DC3, DIC, DICM | - | - | - | - | R DICOM |
| DCP | R/W/C | R/W/C | R/W/C | R/W/C | - |
| DCR | R | R | R | R | - |
| DNG | R/W/C | R/W/C | R/W/C | R/W/C | - |
| DPX | - | - | - | - | R DPX |
| DR4 | - | - | - | - | R/W/C CanonVRD |
| EIP | R | - | - | - | R XML ZIP |
| EPS, EPSF, PS | R/W/C | R/W/C | R/W/C | R/W/C | R/W/C PostScript, R Photoshop |
| ERF | R/W/C | R/W/C | R/W/C | R/W/C | R/W Olympus |
| EXIF | R/W/C | - | - | - | - |
| EXR | - | - | - | - | R OpenEXR |
| EXV | R/W/C | R/W/C | R/W/C | R/W/C | Supported JPEG Meta Information |
| FFF | R/W/C | R/W/C | R/W/C | R/W/C | - |
| FLIF | R/W/C | - | R/W/C | R/W/C | R FLIF |
| FPF | - | - | - | - | R FLIR |
| FPX | - | - | R | R | R FlashPix |
| GIF | - | - | R/W/C | R/W/C | R/W/C GIF |
| GPR | R/W/C | R/W/C | R/W/C | R/W/C | - |
| HDP, WDP, JXR | R/W/C | R/W/C | R/W/C | R/W/C | - |
| HEIC, HEIF | R/W/C | - | R/W/C | R/W | R/W QuickTime |
| ICC, ICM | - | - | - | R/W/C | - |
| IIQ | R/W/C | R/W/C | R/W/C | R/W/C | R/W PhaseOne |
| IND, INDD, INDT | - | - | R/W/C | - | - |
| INX | - | - | R | - | - |
| J2C, J2K, JPC | R3 | R3 | R | R | R Jpeg2000 Photoshop |
| JP2, JPF, JPM, JPX | R/W/C3 | R/W/C3 | R/W/C | R | R/W/C Jpeg2000, R Photoshop |
| JPEG, JPG, JPE | R/W/C | R/W/C | R/W/C | R/W/C | Supported JPEG Meta Information |
| K25 | R | R | R | R | - |
| KDC | R | R | R | R | R Kodak |
| MEF | R/W/C | R/W/C | R/W/C | R/W/C | - |
| MIE | R/W/C | R/W/C | R/W/C | R/W/C | R/W/C MIE |
| MIFF, MIF | R | R | R | R | R MIFF Photoshop |
| MOS | R/W/C | R/W/C | R/W/C | R/W/C | R Leaf |
| MPO | R/W/C | R/W/C | R/W/C | R/W/C | Supported JPEG Meta Information |
| MRW | R/W/C | R/W/C | R/W/C | R/W/C | R/W MinoltaRaw Minolta |
| NEF | R/W/C | R/W/C | R/W/C | R/W/C | R/W Nikon NikonCapture |
| NRW | R/W/C | R/W/C | R/W/C | R/W/C | R/W Nikon NikonCapture |
| ORF | R/W/C | R/W/C | R/W/C | R/W/C | R/W Olympus |
| R3 | R3 | R/W/C | R3 | R/W/C PDF, R Photoshop | |
| PEF | R/W/C | R/W/C | R/W/C | R/W/C | R/W Pentax |
| PMP | - | - | - | - | R Sony |
| PNG, JNG, MNG | R/W/C3 | R/W/C3 | R/W/C | R/W/C | R/W/C PNG |
| PSD, PSB, PSDT | R/W/C | R/W/C | R/W/C | R/W/C | R Photoshop |
| QTIF, QTI, QIF | R/W3 | R/W3 | R/W/C | - | R/W/C QuickTime |
| RAF | R/W/C | R/W/C | R/W/C | R/W/C | R/W FujiFilm |
| RAW | R/W/C | R/W/C | R/W/C | R/W/C | R/W PanasonicRaw Panasonic |
| RW2 | R/W/C | R/W/C | R/W/C | R/W/C | R/W PanasonicRaw Panasonic |
| RWL | R/W/C | R/W/C | R/W/C | R/W/C | R/W PanasonicRaw Panasonic |
| RWZ | R | R | R | R | R Rawzor |
| SR2 | R/W/C | R/W/C | R/W/C | R/W/C | R/W Sony |
| SRF | R | R | R | R | R Sony |
| SRW | R/W/C | R/W/C | R/W/C | R/W/C | R/W Samsung |
| THM | R/W/C | R/W/C | R/W/C | R/W/C | Supported JPEG Meta Information |
| TIFF, TIF | R/W/C | R/W/C | R/W/C | R/W/C | R/W/C GeoTIFF1, R/W Trailers |
| VRD | - | - | R/W/C | - | R/W/C CanonVRD |
| WEBP | R3 | - | R | - | R RIFF |
| X3F | R/W/C | R/W/C | R/W/C | R/W/C | R/W Sigma, R SigmaRaw |
| XCF | R | R | R | R | R GIMP |
